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Fast Data Transfer is an application for moving data quickly writ in Java so it can theoretically run on any platform. Like rsync, it first has to build a file list to send to the receiver, but unlike rsync, it doesn’t tell you that it’s doing that, so unless you use the -D flag, it looks like it has just hung.

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The time required to build the file list is of course proportional to the complexity of the recursive directory scan download. It can also do incremental copies likersync with the -a -k flags, which also allow it to recover from failed transfers. When making the above test, I noticed the disks to and from which the data was being written can have a large effect on the transfer rate.

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For example, using a single rsync on a 10Gb private connection, we were getting only about 30MB/s, mostly because of many tiny files. Using tar/netcat, the average speed went up to about 100MB/s. And using multiple tar/netcat combinations to move specific subdirs, we were able to get an average of 500GB/hr, still not great (~14% of theoretical max), but about 5x better than rsync alone. You must install the repository info, and then the software itself.

If the data is not cached in RAM, the transfer will eventually require the data to be read from or written to the disk. Depending on the storage system, this may slow the eventual transfer if the disk I/O cannot keep up with the the network. On the systems that I used in the example above, I saw this effect when I transferred the data to the /home partition (on a slow IDE disk – see below) rather than the higher performance RAID system that I used above. Unison is a slightly different take on transmitting only changes.

It uses a bi-directional sync algorithm to unify filesystems across a network. Native versions exist for Windows as well as Linux/Unix and it is usually available from the standard Linux repositories.

This is semi-automated via platform-specific apps see the Globus Connect Downloads in the link above. There are 60-plus packages that make up a Globus client; thank god it’s done automatically. If you want to do it manually, the process for doing so is described here, but I’d recommend trying the automatic installation first. The problem with this approach is that it’s a large amount of work for a small amount of advantage relative to bbcp. However, the Multiuser version allows all the users of a server or cluster to take advantage of this protocol with no additional effort, a better tradeoff between effort expended and advantages conferred.

Command to rsync data from UCI’s HPC cluster to a remote backup server. kdirstat-cache-writer, included with and used by the fabulous kdirstat, which is a directory recursion tool that gathers size info about all the files in a tree. This was used in the first version of the above-mentioned parsyncfp to balance the transfer load, until I switched to the fpart partitioner, above.